J3_8HFR_021
3D structure
- PDB id
- 8HFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NPC-trapped pre-60S particle
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 8HFR|1|1e|A|398, 8HFR|1|1e|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8HFR_021 not in the Motif Atlas
- Homologous match to J3_8P9A_047
- Geometric discrepancy: 0.0835
- The information below is about J3_8P9A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
8HFR|1|1e|A|369
8HFR|1|1e|U|370
8HFR|1|1e|G|371
8HFR|1|1e|A|372
8HFR|1|1e|A|373
8HFR|1|1e|A|374
8HFR|1|1e|A|375
8HFR|1|1e|G|376
8HFR|1|1e|A|377
8HFR|1|1e|A|378
8HFR|1|1e|C|379
*
8HFR|1|1e|G|390
8HFR|1|1e|A|391
8HFR|1|1e|G|392
8HFR|1|1e|U|393
8HFR|1|1e|G|394
8HFR|1|1e|A|395
8HFR|1|1e|A|396
8HFR|1|1e|A|397
8HFR|1|1e|A|398
8HFR|1|1e|A|399
8HFR|1|1e|G|400
8HFR|1|1e|U|401
8HFR|1|1e|A|402
8HFR|1|1e|C|403
8HFR|1|1e|G|404
*
8HFR|1|3n|C|19
8HFR|1|3n|U|20
Current chains
- Chain 1e
- 25S ribosomal RNA
- Chain 3n
- 5.8S ribosomal RNA
Nearby chains
- Chain DO
- 60S ribosomal protein L4-A
- Chain Pv
- 60S ribosomal protein L17-A
- Chain YU
- 60S ribosomal protein L26-A
- Chain li
- 60S ribosomal protein L39
- Chain pT
- Probable metalloprotease ARX1
- Chain qJ
- Ribosome biogenesis protein ALB1
- Chain rA
- Nucleolar GTP-binding protein 1
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