J3_8HFR_022
3D structure
- PDB id
- 8HFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NPC-trapped pre-60S particle
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- AGAUGG*CGUUUCAAAGGC*GCCACCAU
- Length
- 26 nucleotides
- Bulged bases
- 8HFR|1|1e|C|1556, 8HFR|1|1e|A|1558, 8HFR|1|1e|A|1580, 8HFR|1|1e|C|1581
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8HFR|1|1e|A|1537
8HFR|1|1e|G|1538
8HFR|1|1e|A|1539
8HFR|1|1e|U|1540
8HFR|1|1e|G|1541
8HFR|1|1e|G|1542
*
8HFR|1|1e|C|1551
8HFR|1|1e|G|1552
8HFR|1|1e|U|1553
8HFR|1|1e|U|1554
8HFR|1|1e|U|1555
8HFR|1|1e|C|1556
8HFR|1|1e|A|1557
8HFR|1|1e|A|1558
8HFR|1|1e|A|1559
8HFR|1|1e|G|1560
8HFR|1|1e|G|1561
8HFR|1|1e|C|1562
*
8HFR|1|1e|G|1577
8HFR|1|1e|C|1578
8HFR|1|1e|C|1579
8HFR|1|1e|A|1580
8HFR|1|1e|C|1581
8HFR|1|1e|C|1582
8HFR|1|1e|A|1583
8HFR|1|1e|U|1584
Current chains
- Chain 1e
- 25S ribosomal RNA
Nearby chains
- Chain 3n
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain B4
- 60S ribosomal protein L2-A
- Chain Hj
- 60S ribosomal protein L8-A
- Chain No
- 60S ribosomal protein L15-A
- Chain Xc
- 60S ribosomal protein L25
- Chain jh
- 60S ribosomal protein L37-A
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