J3_8HFR_024
3D structure
- PDB id
- 8HFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NPC-trapped pre-60S particle
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- GGUCGGGUAGUGAGGGCCUUGGUCAGACGCAGCGG*UUGUUGUAGACGGCCUUGGUAGG*CCGUCGCUUGCUACAAUUAACGAUC
- Length
- 83 nucleotides
- Bulged bases
- 8HFR|1|1e|U|1955, 8HFR|1|1e|G|2048, 8HFR|1|1e|C|2053, 8HFR|1|1e|G|2057, 8HFR|1|1e|A|2060, 8HFR|1|1e|C|2087, 8HFR|1|1e|U|2091, 8HFR|1|1e|A|2092, 8HFR|1|1e|A|2093
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8HFR|1|1e|G|1948
8HFR|1|1e|G|1949
8HFR|1|1e|U|1950
8HFR|1|1e|C|1951
8HFR|1|1e|G|1952
8HFR|1|1e|G|1953
8HFR|1|1e|G|1954
8HFR|1|1e|U|1955
8HFR|1|1e|A|1956
8HFR|1|1e|G|1957
8HFR|1|1e|U|1958
8HFR|1|1e|G|1959
8HFR|1|1e|A|1960
8HFR|1|1e|G|1961
8HFR|1|1e|G|1962
8HFR|1|1e|G|1963
8HFR|1|1e|C|1964
8HFR|1|1e|C|1965
8HFR|1|1e|U|1966
8HFR|1|1e|U|1967
8HFR|1|1e|G|1968
8HFR|1|1e|G|1969
8HFR|1|1e|U|1970
8HFR|1|1e|C|1971
8HFR|1|1e|A|1972
8HFR|1|1e|G|1973
8HFR|1|1e|A|1974
8HFR|1|1e|C|1975
8HFR|1|1e|G|1976
8HFR|1|1e|C|1977
8HFR|1|1e|A|1978
8HFR|1|1e|G|1979
8HFR|1|1e|C|1980
8HFR|1|1e|G|1981
8HFR|1|1e|G|1982
*
8HFR|1|1e|U|2040
8HFR|1|1e|U|2041
8HFR|1|1e|G|2042
8HFR|1|1e|U|2043
8HFR|1|1e|U|2044
8HFR|1|1e|G|2045
8HFR|1|1e|U|2046
8HFR|1|1e|A|2047
8HFR|1|1e|G|2048
8HFR|1|1e|A|2049
8HFR|1|1e|C|2050
8HFR|1|1e|G|2051
8HFR|1|1e|G|2052
8HFR|1|1e|C|2053
8HFR|1|1e|C|2054
8HFR|1|1e|U|2055
8HFR|1|1e|U|2056
8HFR|1|1e|G|2057
8HFR|1|1e|G|2058
8HFR|1|1e|U|2059
8HFR|1|1e|A|2060
8HFR|1|1e|G|2061
8HFR|1|1e|G|2062
*
8HFR|1|1e|C|2074
8HFR|1|1e|C|2075
8HFR|1|1e|G|2076
8HFR|1|1e|U|2077
8HFR|1|1e|C|2078
8HFR|1|1e|G|2079
8HFR|1|1e|C|2080
8HFR|1|1e|U|2081
8HFR|1|1e|U|2082
8HFR|1|1e|G|2083
8HFR|1|1e|C|2084
8HFR|1|1e|U|2085
8HFR|1|1e|A|2086
8HFR|1|1e|C|2087
8HFR|1|1e|A|2088
8HFR|1|1e|A|2089
8HFR|1|1e|U|2090
8HFR|1|1e|U|2091
8HFR|1|1e|A|2092
8HFR|1|1e|A|2093
8HFR|1|1e|C|2094
8HFR|1|1e|G|2095
8HFR|1|1e|A|2096
8HFR|1|1e|U|2097
8HFR|1|1e|C|2098
Current chains
- Chain 1e
- 25S ribosomal RNA
Nearby chains
- Chain RP
- 60S ribosomal protein L19-A
- Chain UF
- 60S ribosomal protein L22-A
- Chain kr
- 60S ribosomal protein L38
Coloring options: