J3_8HFR_025
3D structure
- PDB id
- 8HFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NPC-trapped pre-60S particle
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- GUC*GCCUAUCGAUCC*GGUGCC
- Length
- 21 nucleotides
- Bulged bases
- 8HFR|1|1e|C|2760, 8HFR|1|1e|C|2797
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8HFR_025 not in the Motif Atlas
- Homologous match to J3_8P9A_061
- Geometric discrepancy: 0.0961
- The information below is about J3_8P9A_061
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.1
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
8HFR|1|1e|G|2651
8HFR|1|1e|U|2652
8HFR|1|1e|C|2653
*
8HFR|1|1e|G|2754
8HFR|1|1e|C|2755
8HFR|1|1e|C|2756
8HFR|1|1e|U|2757
8HFR|1|1e|A|2758
8HFR|1|1e|U|2759
8HFR|1|1e|C|2760
8HFR|1|1e|G|2761
8HFR|1|1e|A|2762
8HFR|1|1e|U|2763
8HFR|1|1e|C|2764
8HFR|1|1e|C|2765
*
8HFR|1|1e|G|2793
8HFR|1|1e|G|2794
8HFR|1|1e|U|2795
8HFR|1|1e|G|2796
8HFR|1|1e|C|2797
8HFR|1|1e|C|2798
Current chains
- Chain 1e
- 25S ribosomal RNA
Nearby chains
- Chain Qk
- 60S ribosomal protein L18-A
- Chain Tl
- 60S ribosomal protein L21-A
- Chain aw
- 60S ribosomal protein L28
- Chain mS
- 60S ribosomal protein L42-A
- Chain vV
- 60S ribosomal export protein NMD3
Coloring options: