J3_8HFR_026
3D structure
- PDB id
- 8HFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NPC-trapped pre-60S particle
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- AAUAUAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCAUUUU
- Length
- 38 nucleotides
- Bulged bases
- 8HFR|1|1e|U|3169, 8HFR|1|1e|A|3172, 8HFR|1|1e|G|3173, 8HFR|1|1e|A|3215, 8HFR|1|1e|G|3216, 8HFR|1|1e|G|3219, 8HFR|1|1e|A|3268, 8HFR|1|1e|U|3270, 8HFR|1|1e|C|3272
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8HFR|1|1e|A|3167
8HFR|1|1e|A|3168
8HFR|1|1e|U|3169
8HFR|1|1e|A|3170
8HFR|1|1e|U|3171
8HFR|1|1e|A|3172
8HFR|1|1e|G|3173
8HFR|1|1e|A|3174
8HFR|1|1e|U|3175
8HFR|1|1e|G|3176
*
8HFR|1|1e|C|3212
8HFR|1|1e|A|3213
8HFR|1|1e|U|3214
8HFR|1|1e|A|3215
8HFR|1|1e|G|3216
8HFR|1|1e|C|3217
8HFR|1|1e|A|3218
8HFR|1|1e|G|3219
8HFR|1|1e|G|3220
*
8HFR|1|1e|C|3265
8HFR|1|1e|G|3266
8HFR|1|1e|A|3267
8HFR|1|1e|A|3268
8HFR|1|1e|U|3269
8HFR|1|1e|U|3270
8HFR|1|1e|G|3271
8HFR|1|1e|C|3272
8HFR|1|1e|A|3273
8HFR|1|1e|A|3274
8HFR|1|1e|U|3275
8HFR|1|1e|G|3276
8HFR|1|1e|U|3277
8HFR|1|1e|C|3278
8HFR|1|1e|A|3279
8HFR|1|1e|U|3280
8HFR|1|1e|U|3281
8HFR|1|1e|U|3282
8HFR|1|1e|U|3283
Current chains
- Chain 1e
- 25S ribosomal RNA
Nearby chains
- Chain F8
- 60S ribosomal protein L6-A
- Chain MQ
- 60S ribosomal protein L14-A
- Chain O6
- 60S ribosomal protein L16-A
- Chain Pv
- 60S ribosomal protein L17-A
- Chain f7
- 60S ribosomal protein L33-A
- Chain qJ
- Ribosome biogenesis protein ALB1
- Chain zp
- UPF0642 protein YBL028C
Coloring options: