J3_8HFR_027

3D structure

PDB id

8HFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

NPC-trapped pre-60S particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

CCAUAU*AG*UG

Length

10 nucleotides

Bulged bases

8HFR|1|2f|U|12

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8HFR_027 not in the Motif Atlas

Homologous match to J3_8C3A_059

Geometric discrepancy: 0.0767

The information below is about J3_8C3A_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12003.1

Basepair signature

cWW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

8HFR|1|2f|C|9
8HFR|1|2f|C|10
8HFR|1|2f|A|11
8HFR|1|2f|U|12
8HFR|1|2f|A|13
8HFR|1|2f|U|14
*
8HFR|1|2f|A|66
8HFR|1|2f|G|67
*
8HFR|1|2f|U|111
8HFR|1|2f|G|112

Current chains

Chain 2f

5S ribosomal RNA

Nearby chains

Chain Ez

60S ribosomal protein L5

Chain Tl

60S ribosomal protein L21-A