J3_8HFR_028
3D structure
- PDB id
- 8HFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NPC-trapped pre-60S particle
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- AC*GAUACGU*AAUCU
- Length
- 14 nucleotides
- Bulged bases
- 8HFR|1|3n|U|60, 8HFR|1|3n|C|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8HFR_028 not in the Motif Atlas
- Homologous match to J3_8P9A_067
- Geometric discrepancy: 0.0784
- The information below is about J3_8P9A_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.1
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
8HFR|1|3n|A|44
8HFR|1|3n|C|45
*
8HFR|1|3n|G|58
8HFR|1|3n|A|59
8HFR|1|3n|U|60
8HFR|1|3n|A|61
8HFR|1|3n|C|62
8HFR|1|3n|G|63
8HFR|1|3n|U|64
*
8HFR|1|3n|A|96
8HFR|1|3n|A|97
8HFR|1|3n|U|98
8HFR|1|3n|C|99
8HFR|1|3n|U|100
Current chains
- Chain 3n
- 5.8S ribosomal RNA
Nearby chains
- Chain Xc
- 60S ribosomal protein L25
- Chain h1
- 60S ribosomal protein L35-A
- Chain jh
- 60S ribosomal protein L37-A
- Chain li
- 60S ribosomal protein L39
Coloring options: