J3_8HL2_003

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUCAAUUG*CUGGAAUCUUAC*GGCCG

Length

25 nucleotides

Bulged bases

8HL2|1|A16S|G|946, 8HL2|1|A16S|G|947

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8HL2|1|A16S|C|926
8HL2|1|A16S|U|927
8HL2|1|A16S|C|928
8HL2|1|A16S|A|929
8HL2|1|A16S|A|930
8HL2|1|A16S|U|931
8HL2|1|A16S|U|932
8HL2|1|A16S|G|933
*
8HL2|1|A16S|C|944
8HL2|1|A16S|U|945
8HL2|1|A16S|G|946
8HL2|1|A16S|G|947
8HL2|1|A16S|A|948
8HL2|1|A16S|A|949
8HL2|1|A16S|U|950
8HL2|1|A16S|C|951
8HL2|1|A16S|U|952
8HL2|1|A16S|U|953
8HL2|1|A16S|A|954
8HL2|1|A16S|C|955
*
8HL2|1|A16S|G|1191
8HL2|1|A16S|G|1192
8HL2|1|A16S|C|1193
8HL2|1|A16S|C|1194
8HL2|1|A16S|G|1195

Current chains

Chain A16S

16s rRNA (1493-MER)

Nearby chains

Chain S10P

30S ribosomal protein S10

Chain S13P

30S ribosomal protein S13

Chain S14P

30S ribosomal protein S14 type Z

Chain S19P

30S ribosomal protein S19

Chain S27A

30S ribosomal protein S27ae