J3_8HL2_004

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GAGAC*GAGAG*CGAAAC

Length

16 nucleotides

Bulged bases

8HL2|1|A16S|A|1182

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8HL2|1|A16S|G|961
8HL2|1|A16S|A|962
8HL2|1|A16S|G|963
8HL2|1|A16S|A|964
8HL2|1|A16S|C|965
*
8HL2|1|A16S|G|1007
8HL2|1|A16S|A|1008
8HL2|1|A16S|G|1009
8HL2|1|A16S|A|1010
8HL2|1|A16S|G|1011
*
8HL2|1|A16S|C|1180
8HL2|1|A16S|G|1181
8HL2|1|A16S|A|1182
8HL2|1|A16S|A|1183
8HL2|1|A16S|A|1184
8HL2|1|A16S|C|1185

Current chains

Chain A16S

16s rRNA (1493-MER)

Nearby chains

Chain AEFG

Elongation factor 2

Chain S14P

30S ribosomal protein S14 type Z

Chain S27A

30S ribosomal protein S27ae