J3_8HL2_005

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGCCAG*CGAGAC*GCCACG

Length

18 nucleotides

Bulged bases

8HL2|1|A16S|C|1029, 8HL2|1|A16S|C|1160

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8HL2|1|A16S|C|1027
8HL2|1|A16S|G|1028
8HL2|1|A16S|C|1029
8HL2|1|A16S|C|1030
8HL2|1|A16S|A|1031
8HL2|1|A16S|G|1032
*
8HL2|1|A16S|C|1071
8HL2|1|A16S|G|1072
8HL2|1|A16S|A|1073
8HL2|1|A16S|G|1074
8HL2|1|A16S|A|1075
8HL2|1|A16S|C|1076
*
8HL2|1|A16S|G|1158
8HL2|1|A16S|C|1159
8HL2|1|A16S|C|1160
8HL2|1|A16S|A|1161
8HL2|1|A16S|C|1162
8HL2|1|A16S|G|1163

Current chains

Chain A16S

16s rRNA (1493-MER)

Nearby chains

Chain AS3P

30S ribosomal protein S3

Chain AS5P

30S ribosomal protein S5

Chain AS9P

30S ribosomal protein S9

Chain S10P

30S ribosomal protein S10

Chain S14P

30S ribosomal protein S14 type Z

Chain S17E

30S ribosomal protein S17e