J3_8HL2_010

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CAG*CGAAUAG*CUUG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8HL2_010 not in the Motif Atlas

Homologous match to J3_4V9F_003

Geometric discrepancy: 0.4276

The information below is about J3_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.2

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

10

Unit IDs

8HL2|1|A23S|C|831
8HL2|1|A23S|A|832
8HL2|1|A23S|G|833
*
8HL2|1|A23S|C|865
8HL2|1|A23S|G|866
8HL2|1|A23S|A|867
8HL2|1|A23S|A|868
8HL2|1|A23S|U|869
8HL2|1|A23S|A|870
8HL2|1|A23S|G|871
*
8HL2|1|A23S|C|896
8HL2|1|A23S|U|897
8HL2|1|A23S|U|898
8HL2|1|A23S|G|899

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL2P

50S ribosomal protein L2

Chain L19E

50S ribosomal protein L19e

Chain L37A

50S ribosomal protein L37Ae