J3_8HL2_021

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GGGAUAAG*CGCGAAACG*CGC

Length

20 nucleotides

Bulged bases

8HL2|1|A16S|G|50, 8HL2|1|A16S|A|51, 8HL2|1|A16S|A|54

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8HL2|1|A16S|G|48
8HL2|1|A16S|G|49
8HL2|1|A16S|G|50
8HL2|1|A16S|A|51
8HL2|1|A16S|U|52
8HL2|1|A16S|A|53
8HL2|1|A16S|A|54
8HL2|1|A16S|G|55
*
8HL2|1|A16S|C|371
8HL2|1|A16S|G|372
8HL2|1|A16S|C|373
8HL2|1|A16S|G|374
8HL2|1|A16S|A|375
8HL2|1|A16S|A|376
8HL2|1|A16S|A|377
8HL2|1|A16S|C|378
8HL2|1|A16S|G|379
*
8HL2|1|A16S|C|405
8HL2|1|A16S|G|406
8HL2|1|A16S|C|407

Current chains

Chain A16S

16s rRNA (1493-MER)

Nearby chains

Chain AEFG

Elongation factor 2

Chain S12P

30S ribosomal protein S12