J3_8HL2_025

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CAA*UAGUAA*UGAAUACG

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8HL2|1|A16S|C|907
8HL2|1|A16S|A|908
8HL2|1|A16S|A|909
*
8HL2|1|A16S|U|1314
8HL2|1|A16S|A|1315
8HL2|1|A16S|G|1316
8HL2|1|A16S|U|1317
8HL2|1|A16S|A|1318
8HL2|1|A16S|A|1319
*
8HL2|1|A16S|U|1341
8HL2|1|A16S|G|1342
8HL2|1|A16S|A|1343
8HL2|1|A16S|A|1344
8HL2|1|A16S|U|1345
8HL2|1|A16S|A|1346
8HL2|1|A16S|C|1347
8HL2|1|A16S|G|1348

Current chains

Chain A16S

16s rRNA (1493-MER)

Nearby chains

Chain AS7P

30S ribosomal protein S7

Chain AS9P

30S ribosomal protein S9

Chain S28E

30S ribosomal protein S28e