J3_8HL4_030

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

GG*CUGAAAAGAAC*GAGUGCAAAGAGCC

Length

27 nucleotides

Bulged bases

8HL4|1|A23S|A|548, 8HL4|1|A23S|G|551

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8HL4_030 not in the Motif Atlas

Geometric match to J3_4WF9_011

Geometric discrepancy: 0.3475

The information below is about J3_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.2

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

10

Unit IDs

8HL4|1|A23S|G|21
8HL4|1|A23S|G|22
*
8HL4|1|A23S|C|518
8HL4|1|A23S|U|519
8HL4|1|A23S|G|520
8HL4|1|A23S|A|521
8HL4|1|A23S|A|522
8HL4|1|A23S|A|523
8HL4|1|A23S|A|524
8HL4|1|A23S|G|525
8HL4|1|A23S|A|526
8HL4|1|A23S|A|527
8HL4|1|A23S|C|528
*
8HL4|1|A23S|G|540
8HL4|1|A23S|A|541
8HL4|1|A23S|G|542
8HL4|1|A23S|U|543
8HL4|1|A23S|G|544
8HL4|1|A23S|C|545
8HL4|1|A23S|A|546
8HL4|1|A23S|A|547
8HL4|1|A23S|A|548
8HL4|1|A23S|G|549
8HL4|1|A23S|A|550
8HL4|1|A23S|G|551
8HL4|1|A23S|C|552
8HL4|1|A23S|C|553

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL4P

50S ribosomal protein L4

Chain L22P

50S ribosomal protein L22

Chain L24P

50S ribosomal protein L24

Chain L39E

50S ribosomal protein L39e

Chain L46A

Conserved protein