J3_8HL4_031

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

CUCG*CGAUAGCAAACUAAGUAC*GGAAAG

Length

28 nucleotides

Bulged bases

8HL4|1|A23S|C|25, 8HL4|1|A23S|U|491, 8HL4|1|A23S|U|499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8HL4_031 not in the Motif Atlas

Homologous match to J3_4V9F_013

Geometric discrepancy: 0.3478

The information below is about J3_4V9F_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.2

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

11

Unit IDs

8HL4|1|A23S|C|23
8HL4|1|A23S|U|24
8HL4|1|A23S|C|25
8HL4|1|A23S|G|26
*
8HL4|1|A23S|C|488
8HL4|1|A23S|G|489
8HL4|1|A23S|A|490
8HL4|1|A23S|U|491
8HL4|1|A23S|A|492
8HL4|1|A23S|G|493
8HL4|1|A23S|C|494
8HL4|1|A23S|A|495
8HL4|1|A23S|A|496
8HL4|1|A23S|A|497
8HL4|1|A23S|C|498
8HL4|1|A23S|U|499
8HL4|1|A23S|A|500
8HL4|1|A23S|A|501
8HL4|1|A23S|G|502
8HL4|1|A23S|U|503
8HL4|1|A23S|A|504
8HL4|1|A23S|C|505
*
8HL4|1|A23S|G|512
8HL4|1|A23S|G|513
8HL4|1|A23S|A|514
8HL4|1|A23S|A|515
8HL4|1|A23S|A|516
8HL4|1|A23S|G|517

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL4P

50S ribosomal protein L4

Chain L24P

50S ribosomal protein L24

Chain L37E

50S ribosomal protein L37e

Chain L39E

50S ribosomal protein L39e