J3_8HL4_032
3D structure
- PDB id
- 8HL4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.62 Å
Loop
- Sequence
- GC*GAAAUGC*GGUCC
- Length
- 14 nucleotides
- Bulged bases
- 8HL4|1|A23S|A|62, 8HL4|1|A23S|U|64
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8HL4_032 not in the Motif Atlas
- Homologous match to J3_4V9F_014
- Geometric discrepancy: 0.2081
- The information below is about J3_4V9F_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
8HL4|1|A23S|G|46
8HL4|1|A23S|C|47
*
8HL4|1|A23S|G|60
8HL4|1|A23S|A|61
8HL4|1|A23S|A|62
8HL4|1|A23S|A|63
8HL4|1|A23S|U|64
8HL4|1|A23S|G|65
8HL4|1|A23S|C|66
*
8HL4|1|A23S|G|99
8HL4|1|A23S|G|100
8HL4|1|A23S|U|101
8HL4|1|A23S|C|102
8HL4|1|A23S|C|103
Current chains
- Chain A23S
- 23s rRNA (3000-MER)
Nearby chains
- Chain L23P
- 50S ribosomal protein L23
- Chain L29P
- 50S ribosomal protein L29
- Chain L37E
- 50S ribosomal protein L37e
- Chain L39E
- 50S ribosomal protein L39e
Coloring options: