J3_8HL4_037

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

GCC*GCCUAGCGAACG*CAUGAC

Length

21 nucleotides

Bulged bases

8HL4|1|A23S|A|2513, 8HL4|1|A23S|C|2515, 8HL4|1|A23S|A|2552

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8HL4_037 not in the Motif Atlas

Geometric match to J3_5TBW_067

Geometric discrepancy: 0.191

The information below is about J3_5TBW_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_27903.1

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F

Number of instances in this motif group

5

Unit IDs

8HL4|1|A23S|G|2404
8HL4|1|A23S|C|2405
8HL4|1|A23S|C|2406
*
8HL4|1|A23S|G|2509
8HL4|1|A23S|C|2510
8HL4|1|A23S|C|2511
8HL4|1|A23S|U|2512
8HL4|1|A23S|A|2513
8HL4|1|A23S|G|2514
8HL4|1|A23S|C|2515
8HL4|1|A23S|G|2516
8HL4|1|A23S|A|2517
8HL4|1|A23S|A|2518
8HL4|1|A23S|C|2519
8HL4|1|A23S|G|2520
*
8HL4|1|A23S|C|2548
8HL4|1|A23S|A|2549
8HL4|1|A23S|U|2550
8HL4|1|A23S|G|2551
8HL4|1|A23S|A|2552
8HL4|1|A23S|C|2553

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L15P

50S ribosomal protein L15

Chain L21E

50S ribosomal protein L21e

Chain L44E

50S ribosomal protein L44e