J3_8HL4_038

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

UU*GUUGAU*AAUCA

Length

13 nucleotides

Bulged bases

8HL4|1|A23S|U|2947, 8HL4|1|A23S|A|2949

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8HL4_038 not in the Motif Atlas

Homologous match to J3_4V9F_019

Geometric discrepancy: 0.3434

The information below is about J3_4V9F_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76911.2

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8HL4|1|A23S|U|2928
8HL4|1|A23S|U|2929
*
8HL4|1|A23S|G|2945
8HL4|1|A23S|U|2946
8HL4|1|A23S|U|2947
8HL4|1|A23S|G|2948
8HL4|1|A23S|A|2949
8HL4|1|A23S|U|2950
*
8HL4|1|A23S|A|3008
8HL4|1|A23S|A|3009
8HL4|1|A23S|U|3010
8HL4|1|A23S|C|3011
8HL4|1|A23S|A|3012

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL3P

50S ribosomal protein L3

Chain L22P

50S ribosomal protein L22

Chain L31E

50S ribosomal protein L31e