J3_8HSP_010

3D structure

PDB id

8HSP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

8HSP|1|a|U|686, 8HSP|1|a|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8HSP_010 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.3192

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8HSP|1|a|U|683
8HSP|1|a|G|684
8HSP|1|a|A|685
8HSP|1|a|U|686
8HSP|1|a|C|687
8HSP|1|a|U|688
8HSP|1|a|A|689
*
8HSP|1|a|U|773
8HSP|1|a|G|774
8HSP|1|a|G|775
*
8HSP|1|a|C|791
8HSP|1|a|A|792
8HSP|1|a|A|793
8HSP|1|a|A|794

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain c

50S ribosomal protein L2