J3_8HSP_027

3D structure

PDB id

8HSP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8HSP_027 not in the Motif Atlas

Geometric match to J3_5J7L_036

Geometric discrepancy: 0.0641

The information below is about J3_5J7L_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

8HSP|1|a|G|30
8HSP|1|a|C|31
*
8HSP|1|a|G|474
8HSP|1|a|C|475
8HSP|1|a|G|476
8HSP|1|a|A|477
8HSP|1|a|A|478
8HSP|1|a|A|479
8HSP|1|a|A|480
8HSP|1|a|G|481
*
8HSP|1|a|C|509
8HSP|1|a|C|510

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

50S ribosomal protein L20

Chain t

50S ribosomal protein L24