3D structure

PDB id
8HTZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCUA
Length
25 nucleotides
Bulged bases
8HTZ|1|A|A|975, 8HTZ|1|A|G|976
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8HTZ_004 not in the Motif Atlas
Homologous match to J3_5J7L_006
Geometric discrepancy: 0.0678
The information below is about J3_5J7L_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

8HTZ|1|A|U|955
8HTZ|1|A|U|956
8HTZ|1|A|U|957
8HTZ|1|A|A|958
8HTZ|1|A|A|959
8HTZ|1|A|U|960
8HTZ|1|A|U|961
8HTZ|1|A|C|962
*
8HTZ|1|A|G|973
8HTZ|1|A|A|974
8HTZ|1|A|A|975
8HTZ|1|A|G|976
8HTZ|1|A|A|977
8HTZ|1|A|A|978
8HTZ|1|A|C|979
8HTZ|1|A|C|980
8HTZ|1|A|U|981
8HTZ|1|A|U|982
8HTZ|1|A|A|983
8HTZ|1|A|C|984
*
8HTZ|1|A|G|1221
8HTZ|1|A|G|1222
8HTZ|1|A|C|1223
8HTZ|1|A|U|1224
8HTZ|1|A|A|1225

Current chains

Chain A
16S rRNA

Nearby chains

Chain J
30S ribosomal protein S10
Chain M
30S ribosomal protein S13
Chain N
30S ribosomal protein S14
Chain S
30S ribosomal protein S19
Chain X
Transfer RNA; tRNA

Coloring options:


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