3D structure

PDB id
8HTZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
Length
28 nucleotides
Bulged bases
8HTZ|1|a|A|504, 8HTZ|1|a|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8HTZ_028 not in the Motif Atlas
Homologous match to J3_5J7L_066
Geometric discrepancy: 0.0732
The information below is about J3_5J7L_066
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

8HTZ|1|a|G|30
8HTZ|1|a|C|31
*
8HTZ|1|a|G|474
8HTZ|1|a|C|475
8HTZ|1|a|G|476
8HTZ|1|a|A|477
8HTZ|1|a|A|478
8HTZ|1|a|A|479
8HTZ|1|a|A|480
8HTZ|1|a|G|481
8HTZ|1|a|A|482
8HTZ|1|a|A|483
8HTZ|1|a|C|484
*
8HTZ|1|a|G|496
8HTZ|1|a|A|497
8HTZ|1|a|G|498
8HTZ|1|a|U|499
8HTZ|1|a|G|500
8HTZ|1|a|A|501
8HTZ|1|a|A|502
8HTZ|1|a|A|503
8HTZ|1|a|A|504
8HTZ|1|a|A|505
8HTZ|1|a|G|506
8HTZ|1|a|A|507
8HTZ|1|a|A|508
8HTZ|1|a|C|509
8HTZ|1|a|C|510

Current chains

Chain a
23S rRNA

Nearby chains

Chain p
50S ribosomal protein L20
Chain r
50S ribosomal protein L22
Chain t
50S ribosomal protein L24

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.228 s