3D structure

PDB id
8HU1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and ct6A37 in classical state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.69 Å

Loop

Sequence
GAAC*GUUGAU*AAUGAAC
Length
17 nucleotides
Bulged bases
8HU1|1|a|U|2833
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8HU1_017 not in the Motif Atlas
Homologous match to J3_5J7L_048
Geometric discrepancy: 0.1225
The information below is about J3_5J7L_048
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_64069.1
Basepair signature
cWW-tHS-F-F-F-cWW-cWW-F-F
Number of instances in this motif group
1

Unit IDs

8HU1|1|a|G|2812
8HU1|1|a|A|2813
8HU1|1|a|A|2814
8HU1|1|a|C|2815
*
8HU1|1|a|G|2831
8HU1|1|a|U|2832
8HU1|1|a|U|2833
8HU1|1|a|G|2834
8HU1|1|a|A|2835
8HU1|1|a|U|2836
*
8HU1|1|a|A|2882
8HU1|1|a|A|2883
8HU1|1|a|U|2884
8HU1|1|a|G|2885
8HU1|1|a|A|2886
8HU1|1|a|A|2887
8HU1|1|a|C|2888

Current chains

Chain a
23S rRNA

Nearby chains

Chain d
50S ribosomal protein L3
Chain m
50S ribosomal protein L17
Chain r
50S ribosomal protein L22
Chain z
50S ribosomal protein L32

Coloring options:


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