J3_8I9P_007
3D structure
- PDB id
- 8I9P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Mak16
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AGACUUG*CAGG*CGUAAU
- Length
- 17 nucleotides
- Bulged bases
- 8I9P|1|C1|U|432, 8I9P|1|C1|U|607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8I9P|1|C1|A|428
8I9P|1|C1|G|429
8I9P|1|C1|A|430
8I9P|1|C1|C|431
8I9P|1|C1|U|432
8I9P|1|C1|U|433
8I9P|1|C1|G|434
*
8I9P|1|C1|C|482
8I9P|1|C1|A|483
8I9P|1|C1|G|484
8I9P|1|C1|G|485
*
8I9P|1|C1|C|605
8I9P|1|C1|G|606
8I9P|1|C1|U|607
8I9P|1|C1|A|608
8I9P|1|C1|A|609
8I9P|1|C1|U|610
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain Cd
- Brix domain-containing protein
- Chain Ce
- Protein MAK16
- Chain LE
- 60S ribosomal protein L6
- Chain LP
- 60S ribosomal protein l17-like protein
- Chain Le
- 60S ribosomal protein L32-like protein
- Chain Lf
- 60S ribosomal protein l33-like protein
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