J3_8I9R_001
3D structure
- PDB id
- 8I9R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State 5S RNP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAAUUUGAAA*UAAUUUGGAG*CGACG
- Length
- 26 nucleotides
- Bulged bases
- 8I9R|1|C1|G|151
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8I9R_001 not in the Motif Atlas
- Homologous match to J3_8P9A_042
- Geometric discrepancy: 0.2617
- The information below is about J3_8P9A_042
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69230.1
- Basepair signature
- cWW-tHW-F-F-F-F-tHS-F-cWW-F-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8I9R|1|C1|C|113
8I9R|1|C1|A|114
8I9R|1|C1|A|115
8I9R|1|C1|A|116
8I9R|1|C1|U|117
8I9R|1|C1|U|118
8I9R|1|C1|U|119
8I9R|1|C1|G|120
8I9R|1|C1|A|121
8I9R|1|C1|A|122
8I9R|1|C1|A|123
*
8I9R|1|C1|U|144
8I9R|1|C1|A|145
8I9R|1|C1|A|146
8I9R|1|C1|U|147
8I9R|1|C1|U|148
8I9R|1|C1|U|149
8I9R|1|C1|G|150
8I9R|1|C1|G|151
8I9R|1|C1|A|152
8I9R|1|C1|G|153
*
8I9R|1|C1|C|255
8I9R|1|C1|G|256
8I9R|1|C1|A|257
8I9R|1|C1|C|258
8I9R|1|C1|G|259
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain CC
- Ribosome biogenesis protein ERB1
- Chain CE
- RNA helicase
- Chain CR
- Nucleolar protein 16
- Chain LG
- 60S ribosomal protein L8
- Chain LL
- 60S ribosomal protein L13
- Chain LN
- Ribosomal protein L15
- Chain Lh
- dolichyl-diphosphooligosaccharide--protein glycotransferase
- Chain Li
- 60S ribosomal protein L36
Coloring options: