J3_8I9T_002

3D structure

PDB id

8I9T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8I9T_002 not in the Motif Atlas

Homologous match to J3_8C3A_005

Geometric discrepancy: 0.2337

The information below is about J3_8C3A_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

8I9T|1|C1|G|1212
8I9T|1|C1|A|1213
8I9T|1|C1|C|1214
*
8I9T|1|C1|G|1238
8I9T|1|C1|C|1239
8I9T|1|C1|U|1240
8I9T|1|C1|A|1241
8I9T|1|C1|A|1242
8I9T|1|C1|G|1243
8I9T|1|C1|G|1244
*
8I9T|1|C1|C|1259
8I9T|1|C1|A|1260
8I9T|1|C1|C|1261

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CF

Ribosome assembly factor mrt4

Chain CK

Ribosome biogenesis protein NSA2 homolog

Chain LK

60S ribosomal protein L12-like protein