J3_8I9T_012
3D structure
- PDB id
- 8I9T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UC*GAGGACCGCG*CAAGGA
- Length
- 18 nucleotides
- Bulged bases
- 8I9T|1|C1|A|594
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8I9T_012 not in the Motif Atlas
- Homologous match to J3_8P9A_048
- Geometric discrepancy: 0.1091
- The information below is about J3_8P9A_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_86133.1
- Basepair signature
- cWW-cWW-F-F-F-cWS-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8I9T|1|C1|U|492
8I9T|1|C1|C|493
*
8I9T|1|C1|G|578
8I9T|1|C1|A|579
8I9T|1|C1|G|580
8I9T|1|C1|G|581
8I9T|1|C1|A|582
8I9T|1|C1|C|583
8I9T|1|C1|C|584
8I9T|1|C1|G|585
8I9T|1|C1|C|586
8I9T|1|C1|G|587
*
8I9T|1|C1|C|593
8I9T|1|C1|A|594
8I9T|1|C1|A|595
8I9T|1|C1|G|596
8I9T|1|C1|G|597
8I9T|1|C1|A|598
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain LC
- 60S ribosomal protein L4-like protein
- Chain LE
- 60S ribosomal protein L6
- Chain LF
- 60S ribosomal protein l7-like protein
- Chain Le
- 60S ribosomal protein L32-like protein
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