J3_8I9W_005

3D structure

PDB id

8I9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Dbp10-3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUUG*CUUAU*AGACAUU

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8I9W_005 not in the Motif Atlas

Geometric match to J3_4V9F_007

Geometric discrepancy: 0.3337

The information below is about J3_4V9F_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_86017.1

Basepair signature

cWW-F-F-F-F-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

8I9W|1|C1|A|2394
8I9W|1|C1|U|2395
8I9W|1|C1|U|2396
8I9W|1|C1|G|2397
*
8I9W|1|C1|C|2474
8I9W|1|C1|U|2475
8I9W|1|C1|U|2476
8I9W|1|C1|A|2477
8I9W|1|C1|U|2478
*
8I9W|1|C1|A|2549
8I9W|1|C1|G|2550
8I9W|1|C1|A|2551
8I9W|1|C1|C|2552
8I9W|1|C1|A|2553
8I9W|1|C1|U|2554
8I9W|1|C1|U|2555

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CY

Putative NOC2 family protein