J3_8I9X_012
3D structure
- PDB id
- 8I9X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CGAUAGCGCACAAGUAG*CGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 8I9X|1|C1|U|335, 8I9X|1|C1|A|343, 8I9X|1|C2|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8I9X_012 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0626
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
8I9X|1|C1|C|332
8I9X|1|C1|G|333
8I9X|1|C1|A|334
8I9X|1|C1|U|335
8I9X|1|C1|A|336
8I9X|1|C1|G|337
8I9X|1|C1|C|338
8I9X|1|C1|G|339
8I9X|1|C1|C|340
8I9X|1|C1|A|341
8I9X|1|C1|C|342
8I9X|1|C1|A|343
8I9X|1|C1|A|344
8I9X|1|C1|G|345
8I9X|1|C1|U|346
8I9X|1|C1|A|347
8I9X|1|C1|G|348
*
8I9X|1|C1|C|355
8I9X|1|C1|G|356
8I9X|1|C1|A|357
8I9X|1|C1|A|358
8I9X|1|C1|A|359
8I9X|1|C1|G|360
*
8I9X|1|C2|C|21
8I9X|1|C2|U|22
8I9X|1|C2|U|23
8I9X|1|C2|G|24
Current chains
- Chain C1
- RNA (3341-MER)
- Chain C2
- RNA (319-MER)
Nearby chains
- Chain CR
- Nucleolar protein 16
- Chain LC
- 60S ribosomal protein L4-like protein
- Chain LY
- 60S ribosomal protein L26-like protein
- Chain Lj
- Ribosomal protein L37
- Chain Ll
- 60S ribosomal protein L39
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