J3_8I9Y_013
3D structure
- PDB id
- 8I9Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUGAAAAG*CG*CU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8I9Y_013 not in the Motif Atlas
- Geometric match to J3_8C3A_048
- Geometric discrepancy: 0.094
- The information below is about J3_8C3A_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69021.1
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
8I9Y|1|C1|A|361
8I9Y|1|C1|U|362
8I9Y|1|C1|G|363
8I9Y|1|C1|A|364
8I9Y|1|C1|A|365
8I9Y|1|C1|A|366
8I9Y|1|C1|A|367
8I9Y|1|C1|G|368
*
8I9Y|1|C1|C|395
8I9Y|1|C1|G|396
*
8I9Y|1|C2|C|19
8I9Y|1|C2|U|20
Current chains
- Chain C1
- RNA (3341-MER)
- Chain C2
- RNA (319-MER)
Nearby chains
- Chain LC
- 60S ribosomal protein L4-like protein
- Chain LY
- 60S ribosomal protein L26-like protein
- Chain Ll
- 60S ribosomal protein L39
Coloring options: