J3_8I9Y_017
3D structure
- PDB id
- 8I9Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UCGAUC*GGAAG*CA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8I9Y_017 not in the Motif Atlas
- Homologous match to J3_8P9A_055
- Geometric discrepancy: 0.0956
- The information below is about J3_8P9A_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_94309.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
8I9Y|1|C1|U|1508
8I9Y|1|C1|C|1509
8I9Y|1|C1|G|1510
8I9Y|1|C1|A|1511
8I9Y|1|C1|U|1512
8I9Y|1|C1|C|1513
*
8I9Y|1|C1|G|1570
8I9Y|1|C1|G|1571
8I9Y|1|C1|A|1572
8I9Y|1|C1|A|1573
8I9Y|1|C1|G|1574
*
8I9Y|1|C1|C|1591
8I9Y|1|C1|A|1592
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CJ
- Pescadillo homolog
- Chain LX
- 60S ribosomal protein L25-like protein
- Chain Lg
- Ribosomal protein l34-like protein
- Chain Lk
- 60S ribosomal protein L38-like protein
- Chain Ll
- 60S ribosomal protein L39
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