J3_8I9Y_020

3D structure

PDB id

8I9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGACG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8I9Y_020 not in the Motif Atlas

Homologous match to J3_8C3A_055

Geometric discrepancy: 0.2946

The information below is about J3_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10980.1

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8I9Y|1|C1|A|1633
8I9Y|1|C1|G|1634
8I9Y|1|C1|A|1635
8I9Y|1|C1|C|1636
8I9Y|1|C1|G|1637
*
8I9Y|1|C1|C|1770
8I9Y|1|C1|C|1771
*
8I9Y|1|C1|G|1775
8I9Y|1|C1|A|1776
8I9Y|1|C1|A|1777
8I9Y|1|C1|A|1778
8I9Y|1|C1|A|1779
8I9Y|1|C1|U|1780

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CJ

Pescadillo homolog

Chain CT

Nucleolar complex-associated protein 3

Chain Lg

Ribosomal protein l34-like protein