J3_8I9Z_005
3D structure
- PDB id
- 8I9Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGAAGUG*CAA*UCUG
- Length
- 14 nucleotides
- Bulged bases
- 8I9Z|1|C1|A|1464
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8I9Z_005 not in the Motif Atlas
- Homologous match to J3_8C3A_006
- Geometric discrepancy: 0.0829
- The information below is about J3_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_10154.2
- Basepair signature
- cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F
- Number of instances in this motif group
- 3
Unit IDs
8I9Z|1|C1|C|1461
8I9Z|1|C1|G|1462
8I9Z|1|C1|A|1463
8I9Z|1|C1|A|1464
8I9Z|1|C1|G|1465
8I9Z|1|C1|U|1466
8I9Z|1|C1|G|1467
*
8I9Z|1|C1|C|1836
8I9Z|1|C1|A|1837
8I9Z|1|C1|A|1838
*
8I9Z|1|C1|U|1850
8I9Z|1|C1|C|1851
8I9Z|1|C1|U|1852
8I9Z|1|C1|G|1853
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain CH
- Nucleolar GTP-binding protein 1
- Chain CY
- Putative NOC2 family protein
- Chain LR
- Ribosomal protein L19
- Chain Lg
- Ribosomal protein l34-like protein
Coloring options: