J3_8I9Z_014
3D structure
- PDB id
- 8I9Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AUGAAAAGCAC*GGGUUAAAUAGCACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 8I9Z|1|C1|U|390, 8I9Z|1|C1|A|394
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8I9Z_014 not in the Motif Atlas
- Homologous match to J3_8C3A_049
- Geometric discrepancy: 0.1359
- The information below is about J3_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91149.1
- Basepair signature
- cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8I9Z|1|C1|A|361
8I9Z|1|C1|U|362
8I9Z|1|C1|G|363
8I9Z|1|C1|A|364
8I9Z|1|C1|A|365
8I9Z|1|C1|A|366
8I9Z|1|C1|A|367
8I9Z|1|C1|G|368
8I9Z|1|C1|C|369
8I9Z|1|C1|A|370
8I9Z|1|C1|C|371
*
8I9Z|1|C1|G|382
8I9Z|1|C1|G|383
8I9Z|1|C1|G|384
8I9Z|1|C1|U|385
8I9Z|1|C1|U|386
8I9Z|1|C1|A|387
8I9Z|1|C1|A|388
8I9Z|1|C1|A|389
8I9Z|1|C1|U|390
8I9Z|1|C1|A|391
8I9Z|1|C1|G|392
8I9Z|1|C1|C|393
8I9Z|1|C1|A|394
8I9Z|1|C1|C|395
8I9Z|1|C1|G|396
*
8I9Z|1|C2|C|19
8I9Z|1|C2|U|20
Current chains
- Chain C1
- RNA (3341-MER)
- Chain C2
- RNA (319-MER)
Nearby chains
- Chain LC
- 60S ribosomal protein L4-like protein
- Chain LP
- 60S ribosomal protein l17-like protein
- Chain LY
- 60S ribosomal protein L26-like protein
- Chain Ll
- 60S ribosomal protein L39
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