J3_8IDT_003
3D structure
- PDB id
- 8IDT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State G
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CAG*CGUAG*UCCG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8IDT_003 not in the Motif Atlas
- Homologous match to J3_8C3A_004
- Geometric discrepancy: 0.1762
- The information below is about J3_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44724.5
- Basepair signature
- cWW-tSH-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
8IDT|1|2|C|1546
8IDT|1|2|A|1547
8IDT|1|2|G|1548
*
8IDT|1|2|C|1580
8IDT|1|2|G|1581
8IDT|1|2|U|1582
8IDT|1|2|A|1583
8IDT|1|2|G|1584
*
8IDT|1|2|U|1609
8IDT|1|2|C|1610
8IDT|1|2|C|1611
8IDT|1|2|G|1612
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain F
- 60S ribosomal protein L34
- Chain X
- 60S ribosomal protein L37a
- Chain a
- 60S ribosomal protein L19
- Chain m
- 60S ribosomal protein L8
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