J3_8IDT_022
3D structure
- PDB id
- 8IDT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State G
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AGAUGG*CGUUCCGAAGGG*CGGCCGAU
- Length
- 26 nucleotides
- Bulged bases
- 8IDT|1|2|C|2470, 8IDT|1|2|A|2472, 8IDT|1|2|G|2475, 8IDT|1|2|G|2503, 8IDT|1|2|C|2504
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8IDT|1|2|A|2451
8IDT|1|2|G|2452
8IDT|1|2|A|2453
8IDT|1|2|U|2454
8IDT|1|2|G|2455
8IDT|1|2|G|2456
*
8IDT|1|2|C|2465
8IDT|1|2|G|2466
8IDT|1|2|U|2467
8IDT|1|2|U|2468
8IDT|1|2|C|2469
8IDT|1|2|C|2470
8IDT|1|2|G|2471
8IDT|1|2|A|2472
8IDT|1|2|A|2473
8IDT|1|2|G|2474
8IDT|1|2|G|2475
8IDT|1|2|G|2476
*
8IDT|1|2|C|2501
8IDT|1|2|G|2502
8IDT|1|2|G|2503
8IDT|1|2|C|2504
8IDT|1|2|C|2505
8IDT|1|2|G|2506
8IDT|1|2|A|2507
8IDT|1|2|U|2508
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain G
- 60S ribosomal protein L7a
- Chain M
- 60S ribosomal protein L37
- Chain U
- 60S ribosomal protein L15
- Chain g
- 60S ribosomal protein L23a
- Chain m
- 60S ribosomal protein L8
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