J3_8IDT_025
3D structure
- PDB id
- 8IDT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State G
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GUC*GCCU(5MC)ACGAUCC*(OMG)(MHG)UGUC
- Length
- 21 nucleotides
- Bulged bases
- 8IDT|1|2|C|4337, 8IDT|1|2|U|4374
- QA status
- Modified nucleotides: 5MC, OMG, MHG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8IDT_025 not in the Motif Atlas
- Homologous match to J3_8P9A_061
- Geometric discrepancy: 0.1016
- The information below is about J3_8P9A_061
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.1
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
8IDT|1|2|G|4228
8IDT|1|2|U|4229
8IDT|1|2|C|4230
*
8IDT|1|2|G|4331
8IDT|1|2|C|4332
8IDT|1|2|C|4333
8IDT|1|2|U|4334
8IDT|1|2|5MC|4335
8IDT|1|2|A|4336
8IDT|1|2|C|4337
8IDT|1|2|G|4338
8IDT|1|2|A|4339
8IDT|1|2|U|4340
8IDT|1|2|C|4341
8IDT|1|2|C|4342
*
8IDT|1|2|OMG|4370
8IDT|1|2|MHG|4371
8IDT|1|2|U|4372
8IDT|1|2|G|4373
8IDT|1|2|U|4374
8IDT|1|2|C|4375
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain L
- 60S ribosomal protein L27a
- Chain W
- 60S ribosomal protein L36a
- Chain Z
- 60S ribosomal protein L18
- Chain c
- 60S ribosomal protein L21
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