J3_8IDY_001

3D structure

PDB id

8IDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

8IDY|1|2|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IDY|1|2|C|112
8IDY|1|2|A|113
8IDY|1|2|G|114
8IDY|1|2|C|115
8IDY|1|2|G|116
*
8IDY|1|2|C|155
8IDY|1|2|G|156
8IDY|1|2|U|157
8IDY|1|2|A|158
8IDY|1|2|C|159
8IDY|1|2|G|160
*
8IDY|1|2|C|275
8IDY|1|2|C|276
8IDY|1|2|G|277
8IDY|1|2|G|278

Current chains

Chain 2

28S rRNA

Nearby chains

Chain G

60S ribosomal protein L7a

Chain H

60S ribosomal protein L35

Chain K

60S ribosomal protein L36

Chain Q

60S ribosomal protein L13

Chain U

60S ribosomal protein L15