J3_8IDY_005

3D structure

PDB id

8IDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

8IDY|1|2|A|2396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8IDY_005 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.0862

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

8IDY|1|2|C|2393
8IDY|1|2|G|2394
8IDY|1|2|A|2395
8IDY|1|2|A|2396
8IDY|1|2|G|2397
8IDY|1|2|U|2398
8IDY|1|2|G|2399
*
8IDY|1|2|C|2805
8IDY|1|2|A|2806
8IDY|1|2|A|2807
*
8IDY|1|2|U|2819
8IDY|1|2|C|2820
8IDY|1|2|U|2821
8IDY|1|2|G|2822

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 4

GTP-binding protein 4

Chain F

60S ribosomal protein L34

Chain a

60S ribosomal protein L19