J3_8IDY_006

3D structure

PDB id

8IDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAG*C(B9H)AUAUC*GUC

Length

14 nucleotides

Bulged bases

8IDY|1|2|U|2788, 8IDY|1|2|A|2789

QA status

Modified nucleotides: B9H

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8IDY_006 not in the Motif Atlas

Homologous match to J3_8P9A_054

Geometric discrepancy: 0.1122

The information below is about J3_8P9A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76012.1

Basepair signature

cWW-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8IDY|1|2|G|2402
8IDY|1|2|A|2403
8IDY|1|2|A|2404
8IDY|1|2|G|2405
*
8IDY|1|2|C|2785
8IDY|1|2|B9H|2786
8IDY|1|2|A|2787
8IDY|1|2|U|2788
8IDY|1|2|A|2789
8IDY|1|2|U|2790
8IDY|1|2|C|2791
*
8IDY|1|2|G|2800
8IDY|1|2|U|2801
8IDY|1|2|C|2802

Current chains

Chain 2

28S rRNA

Nearby chains

Chain F

60S ribosomal protein L34

Chain M

60S ribosomal protein L37

Chain P

60S ribosomal protein L39