J3_8IDY_015
3D structure
- PDB id
- 8IDY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State F
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UUGAAAAG*CG*CA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8IDY_015 not in the Motif Atlas
- Geometric match to J3_5TBW_002
- Geometric discrepancy: 0.1217
- The information below is about J3_5TBW_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69021.1
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
8IDY|1|2|U|380
8IDY|1|2|U|381
8IDY|1|2|G|382
8IDY|1|2|A|383
8IDY|1|2|A|384
8IDY|1|2|A|385
8IDY|1|2|A|386
8IDY|1|2|G|387
*
8IDY|1|2|C|414
8IDY|1|2|G|415
*
8IDY|1|8|C|19
8IDY|1|8|A|20
Current chains
- Chain 2
- 28S rRNA
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain 4
- GTP-binding protein 4
- Chain D
- 60S ribosomal protein L4
- Chain P
- 60S ribosomal protein L39
- Chain h
- 60S ribosomal protein L26
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