J3_8IDY_024

3D structure

PDB id

8IDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

8IDY|1|2|U|4882, 8IDY|1|2|A|4938, 8IDY|1|2|C|4940, 8IDY|1|2|A|4943, 8IDY|1|2|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IDY|1|2|G|4751
8IDY|1|2|U|4752
8IDY|1|2|U|4753
8IDY|1|2|G|4754
*
8IDY|1|2|C|4879
8IDY|1|2|C|4880
8IDY|1|2|U|4881
8IDY|1|2|U|4882
8IDY|1|2|C|4883
*
8IDY|1|2|G|4936
8IDY|1|2|C|4937
8IDY|1|2|A|4938
8IDY|1|2|C|4939
8IDY|1|2|C|4940
8IDY|1|2|G|4941
8IDY|1|2|C|4942
8IDY|1|2|A|4943
8IDY|1|2|C|4944
8IDY|1|2|G|4945
8IDY|1|2|U|4946
8IDY|1|2|U|4947
8IDY|1|2|C|4948

Current chains

Chain 2

28S rRNA

Nearby chains

Chain S

60S ribosomal protein L14

Chain V

60S ribosomal protein L13a

Chain n

60S ribosomal protein L35a

Chain o

60S ribosomal protein L6