J3_8IFB_028
3D structure
- PDB id
- 8IFB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dibekacin-bound E.coli 70S ribosome in the PURE system
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.43 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 8IFB|1|a|U|34, 8IFB|1|a|U|448, 8IFB|1|a|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8IFB_028 not in the Motif Atlas
- Homologous match to J3_5J7L_067
- Geometric discrepancy: 0.0394
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
8IFB|1|a|C|32
8IFB|1|a|C|33
8IFB|1|a|U|34
8IFB|1|a|G|35
*
8IFB|1|a|C|445
8IFB|1|a|G|446
8IFB|1|a|A|447
8IFB|1|a|U|448
8IFB|1|a|A|449
8IFB|1|a|G|450
8IFB|1|a|U|451
8IFB|1|a|G|452
8IFB|1|a|A|453
8IFB|1|a|A|454
8IFB|1|a|C|455
8IFB|1|a|C|456
8IFB|1|a|A|457
8IFB|1|a|G|458
8IFB|1|a|U|459
8IFB|1|a|A|460
8IFB|1|a|C|461
*
8IFB|1|a|G|468
8IFB|1|a|G|469
8IFB|1|a|A|470
8IFB|1|a|A|471
8IFB|1|a|A|472
8IFB|1|a|G|473
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L34
- Chain e
- 50S ribosomal protein L4
- Chain p
- 50S ribosomal protein L20
- Chain s
- 50S ribosomal protein L23
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