J3_8IFC_004
3D structure
- PDB id
- 8IFC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Arbekacin-bound E.coli 70S ribosome in the PURE system
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 8IFC|1|A|A|975, 8IFC|1|A|G|976
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8IFC_004 not in the Motif Atlas
- Homologous match to J3_5J7L_006
- Geometric discrepancy: 0.0641
- The information below is about J3_5J7L_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8IFC|1|A|U|955
8IFC|1|A|U|956
8IFC|1|A|U|957
8IFC|1|A|A|958
8IFC|1|A|A|959
8IFC|1|A|U|960
8IFC|1|A|U|961
8IFC|1|A|C|962
*
8IFC|1|A|G|973
8IFC|1|A|A|974
8IFC|1|A|A|975
8IFC|1|A|G|976
8IFC|1|A|A|977
8IFC|1|A|A|978
8IFC|1|A|C|979
8IFC|1|A|C|980
8IFC|1|A|U|981
8IFC|1|A|U|982
8IFC|1|A|A|983
8IFC|1|A|C|984
*
8IFC|1|A|G|1221
8IFC|1|A|G|1222
8IFC|1|A|C|1223
8IFC|1|A|U|1224
8IFC|1|A|A|1225
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain 5
- Transfer RNA; tRNA
- Chain I
- 30S ribosomal protein S9
- Chain J
- 30S ribosomal protein S10
- Chain M
- 30S ribosomal protein S13
- Chain N
- 30S ribosomal protein S14
- Chain S
- 30S ribosomal protein S19
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