J3_8IFD_004
3D structure
- PDB id
- 8IFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dibekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- CGAAGUG*CAA*UCUG
- Length
- 14 nucleotides
- Bulged bases
- 8IFD|1|1A|A|2396
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8IFD_004 not in the Motif Atlas
- Homologous match to J3_8C3A_006
- Geometric discrepancy: 0.0937
- The information below is about J3_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_10154.2
- Basepair signature
- cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F
- Number of instances in this motif group
- 3
Unit IDs
8IFD|1|1A|C|2393
8IFD|1|1A|G|2394
8IFD|1|1A|A|2395
8IFD|1|1A|A|2396
8IFD|1|1A|G|2397
8IFD|1|1A|U|2398
8IFD|1|1A|G|2399
*
8IFD|1|1A|C|2805
8IFD|1|1A|A|2806
8IFD|1|1A|A|2807
*
8IFD|1|1A|U|2819
8IFD|1|1A|C|2820
8IFD|1|1A|U|2821
8IFD|1|1A|G|2822
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 2L
- 60S ribosomal protein L19
- Chain 2a
- 60S ribosomal protein L34
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