J3_8IFD_024
3D structure
- PDB id
- 8IFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dibekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 8IFD|1|1A|U|354, 8IFD|1|1A|A|362, 8IFD|1|1C|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8IFD_024 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0511
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
8IFD|1|1A|C|351
8IFD|1|1A|G|352
8IFD|1|1A|A|353
8IFD|1|1A|U|354
8IFD|1|1A|A|355
8IFD|1|1A|G|356
8IFD|1|1A|U|357
8IFD|1|1A|C|358
8IFD|1|1A|A|359
8IFD|1|1A|A|360
8IFD|1|1A|C|361
8IFD|1|1A|A|362
8IFD|1|1A|A|363
8IFD|1|1A|G|364
8IFD|1|1A|U|365
8IFD|1|1A|A|366
8IFD|1|1A|C|367
*
8IFD|1|1A|G|374
8IFD|1|1A|G|375
8IFD|1|1A|A|376
8IFD|1|1A|A|377
8IFD|1|1A|A|378
8IFD|1|1A|G|379
*
8IFD|1|1C|C|21
8IFD|1|1C|U|22
8IFD|1|1C|C|23
8IFD|1|1C|G|24
Current chains
- Chain 1A
- 28S ribosomal RNA
- Chain 1C
- 5.8S ribosomal RNA
Nearby chains
- Chain 1F
- 60S ribosomal protein L4
- Chain 2S
- 60S ribosomal protein L26
- Chain 2d
- 60S ribosomal protein L37
- Chain 2f
- 60S ribosomal protein L39
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