J3_8IFD_042
3D structure
- PDB id
- 8IFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dibekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- CUUAAUUU*GGGAAACCUCACC*GGGCUG
- Length
- 27 nucleotides
- Bulged bases
- 8IFD|1|2m|G|1256, 8IFD|1|2m|A|1258
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8IFD_042 not in the Motif Atlas
- Geometric match to J3_6CZR_062
- Geometric discrepancy: 0.3157
- The information below is about J3_6CZR_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_59791.1
- Basepair signature
- cWW-F-F-F-F-F-tSS-F-F-F-F-F-F-F-F-F-F-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
8IFD|1|2m|C|1237
8IFD|1|2m|U|1238
8IFD|1|2m|U|1239
8IFD|1|2m|A|1240
8IFD|1|2m|A|1241
8IFD|1|2m|U|1242
8IFD|1|2m|U|1243
8IFD|1|2m|U|1244
*
8IFD|1|2m|G|1255
8IFD|1|2m|G|1256
8IFD|1|2m|G|1257
8IFD|1|2m|A|1258
8IFD|1|2m|A|1259
8IFD|1|2m|A|1260
8IFD|1|2m|C|1261
8IFD|1|2m|C|1262
8IFD|1|2m|U|1263
8IFD|1|2m|C|1264
8IFD|1|2m|A|1265
8IFD|1|2m|C|1266
8IFD|1|2m|C|1267
*
8IFD|1|2m|G|1515
8IFD|1|2m|G|1516
8IFD|1|2m|G|1517
8IFD|1|2m|C|1518
8IFD|1|2m|U|1519
8IFD|1|2m|G|1520
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 21
- 40S ribosomal protein S20
- Chain 2w
- 40S ribosomal protein S15
- Chain 2z
- 40S ribosomal protein S18
- Chain 3E
- 40S ribosomal protein S29
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