J3_8IFE_001

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

8IFE|1|1A|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IFE|1|1A|C|112
8IFE|1|1A|A|113
8IFE|1|1A|G|114
8IFE|1|1A|C|115
8IFE|1|1A|G|116
*
8IFE|1|1A|C|155
8IFE|1|1A|G|156
8IFE|1|1A|U|157
8IFE|1|1A|A|158
8IFE|1|1A|C|159
8IFE|1|1A|G|160
*
8IFE|1|1A|C|275
8IFE|1|1A|C|276
8IFE|1|1A|G|277
8IFE|1|1A|G|278

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2B

60S ribosomal protein L7a

Chain 2F

60S ribosomal protein L13

Chain 2H

60S ribosomal protein L15

Chain 2b

60S ribosomal protein L35

Chain 2c

60S ribosomal protein L36