J3_8IFE_007

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8IFE_007 not in the Motif Atlas

Geometric match to J3_8VTW_006

Geometric discrepancy: 0.3684

The information below is about J3_8VTW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.4

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

8IFE|1|1A|C|3937
8IFE|1|1A|G|3938
8IFE|1|1A|G|3939
*
8IFE|1|1A|C|4074
8IFE|1|1A|U|4075
8IFE|1|1A|G|4076
8IFE|1|1A|A|4077
8IFE|1|1A|C|4078
*
8IFE|1|1A|G|4168
8IFE|1|1A|G|4169
8IFE|1|1A|A|4170
8IFE|1|1A|C|4171
8IFE|1|1A|A|4172
8IFE|1|1A|G|4173

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1D

60S ribosomal protein L8

Chain 2B

60S ribosomal protein L7a

Chain 2H

60S ribosomal protein L15