J3_8IFE_018

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

CCGGAC*GGGUGG*CUUAGAUG

Length

20 nucleotides

Bulged bases

8IFE|1|2m|C|1273, 8IFE|1|2m|G|1274, 8IFE|1|2m|G|1507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IFE|1|2m|C|1272
8IFE|1|2m|C|1273
8IFE|1|2m|G|1274
8IFE|1|2m|G|1275
8IFE|1|2m|A|1276
8IFE|1|2m|C|1277
*
8IFE|1|2m|G|1320
8IFE|1|2m|G|1321
8IFE|1|2m|G|1322
8IFE|1|2m|U|1323
8IFE|1|2m|G|1324
8IFE|1|2m|G|1325
*
8IFE|1|2m|C|1503
8IFE|1|2m|U|1504
8IFE|1|2m|U|1505
8IFE|1|2m|A|1506
8IFE|1|2m|G|1507
8IFE|1|2m|A|1508
8IFE|1|2m|U|1509
8IFE|1|2m|G|1510

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2u

40S ribosomal protein S10

Chain 3E

40S ribosomal protein S29

Chain 3R

Ubiquitin-40S ribosomal protein S27a